I though the whole reason they sent a human to do that job is so the human could thoroughly check things out and might notice unusual things like massive planet-wide tidal waves.
How would they do that given the time dilation? Let's say the waves come every two hours. The scientist would have to stay in orbit for up to 14 years to properly observe them once. Humanity didn't have that time. They also didn't have time for him to go onto the planet, wait around for a few hours and then send the signal.
He most likely observed the planet, didn't see any issues (due to the time dilation), went down, sent a good ping, and then the wave took him. That's not a massive plot hole.