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I have a folder that all my docker services are in. Inside the folder is a folder for each discrete service and within that folder is a unique compose file necessary to run the service. Also in the folder is all the storage folders for that service so it's completely portable, move the folder to any server and run it and you're golden. I shut down all the services with a script then I can just tar the whole docker folder and every service and its data is backed up and portable.
Exactly what I do except my master folder is
~I do ~/docker so I also have a docker-prototype folder for my sandbox/messing around with non-production stuff and I have a third folder for retired docker services so I keep the recipe and data in case I go back.