I'll go first.

Winner:
Breaking Bad, season 3 episode 10, "Fly"

Honorable mention:
Community, season 3 episode 10, "Cooperative Calligraphy"

PS: I'm having a hard time categorizing these as real bottle episodes since they don't feel cheap or "fillery" at all, but they are at least specially and plot wise confined.

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[–] 2 points 6 hours ago

Inside No. 9

Every episode is a bottle episode.

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