Exactly, and that's why the response has been so negative. Every instance that federates with another stores a complete copy of the posts and comments from every federated user.
If the majority of instances do not defederate from a Meta instance, that Instance will inevitably become the primary destination for discussion, even between and by non Meta-Instance based users, just because the communities in that Instance will be so large and active. And even if they don't, Meta Instance will have a stored copy of every community whose Instance is federated.
Meta will then have carte blanche to collect data on a huge collection of users from outside their own Instance.
I acknowledge that they could get the same data by scraping the public Instances anyway, but still... Fuck all of that.