They recovered four, three of them AT the crash sites! How. The black boxes didn't even survive. 
^this. The furthest extent that there is some kind of 9/11 conspiracy is that the Bush admin might have been expecting some type of domestic event or other to happen that they could use as just cause for an invasion. They did not expect - let alone orchestrate - 9/11.
Humans have pattern matching brains. It's easy to find stuff like the building owner having a dermatologist appointment that day. And then you completely fail to analyze it in the context that he probably also had a dentist's appointment the last week too. Same goes for every other thing.