Even ignoring the fact that Western science has roots in Catholicism,
That too is decidedly false. The sciences existed before Catholicism. Catholics just wanted to control science, like they wanted to control the minds of people in general. Science progressed despite Catholicism, not because of it.
The biggest religions in the world seem to have quite a bit of hierarchy and structure,
Being Authoritarian and relying on power without merit, doesn't mean it's in any way comparable to science, which is a meritocracy, where logic based on evidence prevails over bullshit pulled out of someones ass, which is what religion is based on.
So again you’ve proved my point. It’s not the disagreement you have a problem with, it’s something else entirely.
It's absolutely about the disagreement and how disagreements are resolved, it's just not only the simplistically interpreted disagreement you present.