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[–] 28 points 3 years ago* (last edited 3 years ago) (4 children)

In my case it wasn't the boot entry being removed. It actually ate the partition. When installing Linux Mint, I resized the Windows partition in Linux. Then I noticed that Windows absolutely didn't recognize that change, and thought its partition is still as big as it used to. Then on a restart it hit me with the "Repairing drive C:" which killed the Linux partition leaving just something corrupted.
"Repairing"

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