So, the main advantage is that it is ensured that an update will not brick the system?
That is pretty neat, but it's been quite a while since the last update which broke something for me. And that was either on arch of switching Debian version.
I reckon it is nice that you ensure updates won't break anything, even though I'm not sure that can be ensured, in most cases I had it was the repo itself which made mistakes in packaging the software who broke it and I don't think there's solution for that. Either way, I myself do not see this such an advantage as to displace the pain of having everything run in flatpak.
