If you're using kbin, the reputation is calculated between your boosts and downvotes. This is a flaw from how this instance tried to retool the platform, but will be rectified soon so that reputation will be the simple arithmetic of upvotes minus downvotes.
In other instances, the upvotes are called boosts, but here on kbin, the functionally of boosts is how your content is getting promoted in other instances, from what I understand. Boosts are like retweets on other users' activity feeds here in kbin.
As mentioned, this will be ironed out.