This why you check your backups periodically and replace the bad ones with good copies. If you're asking how you know what's good and bad - traditionally and fundamentally, even if many people here dismiss it, the storage already has checksums, that sneaky bitrot when the storage will give you slightly altered data (instead of saying "Error") are so small that most people would never encounter this. Now of course serious data hoarders would use checksumming file systems, will do extra checksums for any archived data, also all archiving formats or backup formats have their own checksums too, if one would use that instead of dropping the files in the regular file system.
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