Bees can kill their queen and make a new one no problem.

This doesn't make the mutilation of the queen bee any less bad. It's still harming the bee. I am not aware if a bee has the ability to make an informed decision on whether to kill the queen and relocate, so I cannot make an informed decision about whether the bees actually want to be in their current hive.

If the colony would want to move away they would just do that.

I don't know if this is true. It's possible the bees are being manipulated into staying at their current hive in some way.

I don't think clipping the queen wings would do nothing

It would hurt the queen, which is more than I want to be involved in.

But I doubt any beekeeper colony would want to move as they are keep at a perfect environment so they can produce more honey that they would actually need to survive. Even industrial ones. It's part of basic beekeeping that bees must be in a good place so they produce the most honey

Making an assumption about what the bees want is not strong enough of an excuse for me to be ok with their exploitation. I don't believe we should have the right to make decisions for other organisms, and the bees are not able to tell us how they want to be treated, so we should not try to control them or take what they produce.

Hurt of mistreated bees would not produce honey.

This appears to also be an assumption. I do not know if it is true, so I cannot use it to make a decision

If they are mistreated the try to leave (and as stated they can just kill their Queen if she is crippled), they eat all the honey, or just die.

If this is true, there is likely to be a minimum amount of mistreatment before they take action. I do not know how much mistreatment a bee can take, so I cannot use this to make a decision.

Bees are really complicate to get advantage of. Our relationship with them need to be symbiotic to work.

I do not know if this is true. We take advantage of many animals without giving them much in return, so I am not sure if the bee-beeker relationship is actually symbiotic.